Detailed information of SNP:
|
SNP ID:
sf0315758487(Gbrowse)
Chromosome: chr03 Position: 15758487 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 97.67% | 2.33% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315758487 | C->T | INTERGENIC | None |