Detailed information of SNP:
|
SNP ID:
sf0315776649(Gbrowse)
Chromosome: chr03 Position: 15776649 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.25% | 32.75% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315776649 | T->C | INTERGENIC | None |