Detailed information of SNP:
|
SNP ID:
sf0315777627(Gbrowse)
Chromosome: chr03 Position: 15777627 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.34% | 35.66% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315777627 | G->A | INTERGENIC | None |