Detailed information of SNP:
|
SNP ID:
sf0315817195(Gbrowse)
Chromosome: chr03 Position: 15817195 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 58.69% | 41.31% |
| All Indica | 792 | 88.01% | 11.99% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 370 | 89.73% | 10.27% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315817195 | G->A | INTERGENIC | None |