Detailed information of SNP:
|
SNP ID:
sf0315817200(Gbrowse)
Chromosome: chr03 Position: 15817200 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.09% | 42.91% |
| All Indica | 798 | 85.59% | 14.41% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315817200 | C->T | INTERGENIC | None |