Detailed information of SNP:
|
SNP ID:
sf0315835791(Gbrowse)
Chromosome: chr03 Position: 15835791 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1227 | 92.67% | 7.33% |
| All Indica | 792 | 97.47% | 2.53% |
| All Japonica | 314 | 81.53% | 18.47% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 185 | 79.46% | 20.54% |
| Tropical Japonica | 87 | 95.40% | 4.60% |
| Japonica Intermediate | 42 | 61.90% | 38.10% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315835791 | C->G | LOC_Os03g27610(LOC_Os03g27610.1) | INTRON |