Detailed information of SNP:
|
SNP ID:
sf0315853304(Gbrowse)
Chromosome: chr03 Position: 15853304 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315853304 | T->C | INTERGENIC | None |