Detailed information of SNP:
|
SNP ID:
sf0315888871(Gbrowse)
Chromosome: chr03 Position: 15888871 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1254 | 94.18% | 5.82% |
| All Indica | 687 | 91.70% | 8.30% |
| All Japonica | 455 | 98.46% | 1.54% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 323 | 91.33% | 8.67% |
| Indica II | 183 | 93.99% | 6.01% |
| Indica Intermediate | 181 | 90.06% | 9.94% |
| Temperate Japonica | 312 | 99.68% | 0.32% |
| Tropical Japonica | 81 | 93.83% | 6.17% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315888871 | T->C | INTERGENIC | None |