Detailed information of SNP:
|
SNP ID:
sf0315901796(Gbrowse)
Chromosome: chr03 Position: 15901796 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.66% | 36.34% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315901796 | G->A | INTERGENIC | None |