Detailed information of SNP:
|
SNP ID:
sf0315903921(Gbrowse)
Chromosome: chr03 Position: 15903921 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 67.75% | 32.25% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315903921 | A->G | INTERGENIC | None |