Detailed information of SNP:
|
SNP ID:
sf0315918790(Gbrowse)
Chromosome: chr03 Position: 15918790 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.71% | 37.29% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 496 | 12.70% | 87.30% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315918790 | G->C | INTERGENIC | None |