Detailed information of SNP:
|
SNP ID:
sf0315929582(Gbrowse)
Chromosome: chr03 Position: 15929582 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 94.48% | 5.52% |
| All Indica | 793 | 92.56% | 7.44% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 91.37% | 8.63% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315929582 | A->T | INTERGENIC | None |