Detailed information of SNP:
|
SNP ID:
sf0315942752(Gbrowse)
Chromosome: chr03 Position: 15942752 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 71.86% | 28.14% |
| All Indica | 791 | 99.75% | 0.25% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315942752 | G->A | INTERGENIC | None |