Detailed information of SNP:
|
SNP ID:
sf0315951428(Gbrowse)
Chromosome: chr03 Position: 15951428 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 496 | 12.90% | 87.10% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315951428 | A->G | INTERGENIC | None |