Detailed information of SNP:
|
SNP ID:
sf0315981717(Gbrowse)
Chromosome: chr03 Position: 15981717 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 86.11% | 13.89% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315981717 | A->G | INTERGENIC | None |