Detailed information of SNP:
|
SNP ID:
sf0316017910(Gbrowse)
Chromosome: chr03 Position: 16017910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 86.80% | 13.20% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316017910 | C->T | INTERGENIC | None |