Detailed information of SNP:
|
SNP ID:
sf0316027398(Gbrowse)
Chromosome: chr03 Position: 16027398 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 89.16% | 10.84% |
| All Indica | 794 | 89.29% | 10.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316027398 | G->A | LOC_Os03g27910(LOC_Os03g27910.1) | Non-Synonymous SNP |