Detailed information of SNP:
|
SNP ID:
sf0316030857(Gbrowse)
Chromosome: chr03 Position: 16030857 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 798 | 85.96% | 14.04% |
| All Japonica | 496 | 8.27% | 91.73% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316030857 | G->A | INTERGENIC | None |