Detailed information of SNP:
|
SNP ID:
sf0316036350(Gbrowse)
Chromosome: chr03 Position: 16036350 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.11% | 4.89% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 491 | 87.58% | 12.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 91.21% | 8.79% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316036350 | G->A | INTERGENIC | None |