Detailed information of SNP:
|
SNP ID:
sf0316039469(Gbrowse)
Chromosome: chr03 Position: 16039469 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.17% | 46.83% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316039469 | C->T | LOC_Os03g27930(LOC_Os03g27930.1) | INTRON |