Detailed information of SNP:
|
SNP ID:
sf0316047279(Gbrowse)
Chromosome: chr03 Position: 16047279 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.74% | 46.26% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316047279 | G->T | INTERGENIC | None |