Detailed information of SNP:
|
SNP ID:
sf0316090769(Gbrowse)
Chromosome: chr03 Position: 16090769 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.26% | 10.74% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 494 | 81.17% | 18.83% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 91.92% | 8.08% |
| Tropical Japonica | 92 | 65.22% | 34.78% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316090769 | T->A | INTERGENIC | None |