Detailed information of SNP:
SNP ID:
sf0316094868(Gbrowse)
Chromosome: chr03 Position: 16094868 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1412 | 96.81% | 3.19% |
All Indica | 799 | 99.37% | 0.63% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 61 | 42.62% | 57.38% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0316094868 | C->T | LOC_Os03g28010(LOC_Os03g28010.1) | Synonymous |