Detailed information of SNP:



SNP ID: sf0316094868(Gbrowse)

Chromosome: chr03

Position: 16094868
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 96.81% 3.19%
All Indica799 99.37% 0.63%
All Japonica497 100.00% 0.00%
Aus61 42.62% 57.38%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 87.80% 12.20%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0316094868 C->T LOC_Os03g28010(LOC_Os03g28010.1) Synonymous