Detailed information of SNP:
|
SNP ID:
sf0316101749(Gbrowse)
Chromosome: chr03 Position: 16101749 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.57% | 36.43% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316101749 | A->G | LOC_Os03g28010(LOC_Os03g28010.1) | Non-Synonymous SNP |