Detailed information of SNP:
|
SNP ID:
sf0316107173(Gbrowse)
Chromosome: chr03 Position: 16107173 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 52.33% | 47.67% |
| All Indica | 796 | 17.84% | 82.16% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 19.84% | 80.16% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 211 | 17.06% | 82.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316107173 | A->T | LOC_Os03g28020(LOC_Os03g28020.1) | Non-Synonymous SNP |