Detailed information of SNP:
|
SNP ID:
sf0316108104(Gbrowse)
Chromosome: chr03 Position: 16108104 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.22% | 21.78% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316108104 | A->G | INTERGENIC | None |