Detailed information of SNP:
|
SNP ID:
sf0316142922(Gbrowse)
Chromosome: chr03 Position: 16142922 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 91.44% | 8.56% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 481 | 77.96% | 22.04% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 326 | 77.91% | 22.09% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 62 | 51.61% | 48.39% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316142922 | G->A | INTERGENIC | None |