Detailed information of SNP:



SNP ID: sf0316147097(Gbrowse)

Chromosome: chr03

Position: 16147097
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.12% 3.88%
All Indica799 99.12% 0.88%
All Japonica497 99.60% 0.40%
Aus67 40.30% 59.70%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0316147097 C->T INTERGENIC None