Detailed information of SNP:
|
SNP ID:
sf0316165356(Gbrowse)
Chromosome: chr03 Position: 16165356 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 70.56% | 29.44% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 465 | 22.15% | 77.85% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 17.93% | 82.07% |
| Tropical Japonica | 78 | 47.44% | 52.56% |
| Japonica Intermediate | 58 | 12.07% | 87.93% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316165356 | T->G | LOC_Os03g28120(LOC_Os03g28120.1) | INTRON |