Detailed information of SNP:
|
SNP ID:
sf0316204114(Gbrowse)
Chromosome: chr03 Position: 16204114 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 70.47% | 29.53% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 24.95% | 75.05% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316204114 | T->C | INTERGENIC | None |