Detailed information of SNP:
|
SNP ID:
sf0316213931(Gbrowse)
Chromosome: chr03 Position: 16213931 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 53.99% | 46.01% |
| All Indica | 798 | 33.08% | 66.92% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 39.20% | 60.80% |
| Indica II | 212 | 16.98% | 83.02% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 334 | 91.32% | 8.68% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316213931 | A->G | LOC_Os03g28170(LOC_Os03g28170.1) | UTR_3_PRIME |