Detailed information of SNP:
|
SNP ID:
sf0316215462(Gbrowse)
Chromosome: chr03 Position: 16215462 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 87.68% | 12.32% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 67.82% | 32.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 68.18% | 31.82% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316215462 | T->C | INTERGENIC | None |