Detailed information of SNP:



SNP ID: sf0316215462(Gbrowse)

Chromosome: chr03

Position: 16215462
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 87.68% 12.32%
All Indica799 100.00% 0.00%
All Japonica491 67.82% 32.18%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica330 68.18% 31.82%
Tropical Japonica93 60.22% 39.78%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 28.57% 71.43%
Intermediate41 87.80% 12.20%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0316215462 T->C INTERGENIC None