Detailed information of SNP:
|
SNP ID:
sf0316216147(Gbrowse)
Chromosome: chr03 Position: 16216147 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 92.18% | 7.82% |
| All Indica | 794 | 91.06% | 8.94% |
| All Japonica | 417 | 99.28% | 0.72% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 312 | 100.00% | 0.00% |
| Tropical Japonica | 69 | 97.10% | 2.90% |
| Japonica Intermediate | 36 | 97.22% | 2.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316216147 | C->T | INTERGENIC | None |