Detailed information of SNP:
|
SNP ID:
sf0316217926(Gbrowse)
Chromosome: chr03 Position: 16217926 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 84.52% | 15.48% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 481 | 65.90% | 34.10% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 78 | 51.28% | 48.72% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316217926 | A->G | INTERGENIC | None |