Detailed information of SNP:
|
SNP ID:
sf0316221516(Gbrowse)
Chromosome: chr03 Position: 16221516 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 71.79% | 28.21% |
| All Indica | 791 | 66.62% | 33.38% |
| All Japonica | 497 | 82.09% | 17.91% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 369 | 60.70% | 39.30% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316221516 | T->C | INTERGENIC | None |