Detailed information of SNP:
|
SNP ID:
sf0316223296(Gbrowse)
Chromosome: chr03 Position: 16223296 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1167 | 78.92% | 21.08% |
| All Indica | 592 | 62.67% | 37.33% |
| All Japonica | 461 | 98.48% | 1.52% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 284 | 65.85% | 34.15% |
| Indica II | 144 | 50.00% | 50.00% |
| Indica Intermediate | 164 | 68.29% | 31.71% |
| Temperate Japonica | 318 | 99.37% | 0.63% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 60 | 95.00% | 5.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 34 | 85.29% | 14.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316223296 | C->T | INTERGENIC | None |