Detailed information of SNP:
|
SNP ID:
sf0316248154(Gbrowse)
Chromosome: chr03 Position: 16248154 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 95.62% | 4.38% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 457 | 90.37% | 9.63% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 95.68% | 4.32% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316248154 | G->A | INTERGENIC | None |