Detailed information of SNP:
|
SNP ID:
sf0316249869(Gbrowse)
Chromosome: chr03 Position: 16249869 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.57% | 5.43% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316249869 | T->A | LOC_Os03g28260(LOC_Os03g28260.1) | INTRON |