Detailed information of SNP:
|
SNP ID:
sf0316261197(Gbrowse)
Chromosome: chr03 Position: 16261197 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 53.36% | 46.64% |
| All Indica | 797 | 81.56% | 18.44% |
| All Japonica | 496 | 8.67% | 91.33% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 70.86% | 29.14% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316261197 | G->T | LOC_Os03g28270(LOC_Os03g28270.1) | INTRON |