Detailed information of SNP:
|
SNP ID:
sf0316310278(Gbrowse)
Chromosome: chr03 Position: 16310278 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 52.44% | 47.56% |
| All Indica | 798 | 23.31% | 76.69% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 210 | 20.00% | 80.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316310278 | G->A | INTERGENIC | None |