Detailed information of SNP:
|
SNP ID:
sf0316320329(Gbrowse)
Chromosome: chr03 Position: 16320329 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.13% | 40.87% |
| All Indica | 799 | 80.85% | 19.15% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316320329 | T->A | INTERGENIC | None |