Detailed information of SNP:
|
SNP ID:
sf0316334563(Gbrowse)
Chromosome: chr03 Position: 16334563 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.79% | 5.21% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316334563 | G->A | LOC_Os03g28360(LOC_Os03g28360.1) | SNPs that introduce stop codons |