Detailed information of SNP:
|
SNP ID:
sf0316339615(Gbrowse)
Chromosome: chr03 Position: 16339615 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.63% | 49.37% |
| All Indica | 798 | 21.05% | 78.95% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 29.68% | 70.32% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316339615 | T->C | INTERGENIC | None |