Detailed information of SNP:
|
SNP ID:
sf0316347588(Gbrowse)
Chromosome: chr03 Position: 16347588 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 64.80% | 35.20% |
| All Indica | 759 | 43.21% | 56.79% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 358 | 54.47% | 45.53% |
| Indica II | 201 | 25.37% | 74.63% |
| Indica Intermediate | 200 | 41.00% | 59.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316347588 | C->T | LOC_Os03g28370(LOC_Os03g28370.1) | Synonymous |