Detailed information of SNP:
|
SNP ID:
sf0316395069(Gbrowse)
Chromosome: chr03 Position: 16395069 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 95.66% | 4.34% |
| All Indica | 787 | 93.77% | 6.23% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316395069 | G->A | INTERGENIC | None |