Detailed information of SNP:
|
SNP ID:
sf0316409828(Gbrowse)
Chromosome: chr03 Position: 16409828 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 69.39% | 30.61% |
| All Indica | 798 | 79.32% | 20.68% |
| All Japonica | 497 | 49.50% | 50.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 40.60% | 59.40% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316409828 | G->A | INTERGENIC | None |