Detailed information of SNP:
|
SNP ID:
sf0316452556(Gbrowse)
Chromosome: chr03 Position: 16452556 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 66.90% | 33.10% |
| All Indica | 797 | 76.29% | 23.71% |
| All Japonica | 491 | 48.27% | 51.73% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 332 | 38.86% | 61.14% |
| Tropical Japonica | 92 | 65.22% | 34.78% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316452556 | G->A | INTERGENIC | None |