Detailed information of SNP:
|
SNP ID:
sf0316453104(Gbrowse)
Chromosome: chr03 Position: 16453104 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.63% | 15.37% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316453104 | T->C | INTERGENIC | None |