Detailed information of SNP:
|
SNP ID:
sf0316454398(Gbrowse)
Chromosome: chr03 Position: 16454398 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.01% | 31.99% |
| All Indica | 797 | 79.05% | 20.95% |
| All Japonica | 494 | 47.37% | 52.63% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 70.05% | 29.95% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 334 | 38.32% | 61.68% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316454398 | T->C | INTERGENIC | None |