Detailed information of SNP:
|
SNP ID:
sf0316472670(Gbrowse)
Chromosome: chr03 Position: 16472670 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 90.42% | 9.58% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316472670 | A->G | LOC_Os03g29020(LOC_Os03g29020.1) | Non-Synonymous SNP |